Mr. Jindou Shi Profile

Jindou Shi

at Univ. of Illinois

SPIE Involvement:

Author

Publications (20)

SPIE Journal Paper | 17 July 2024 Open Access

Stable high-peak-power fiber supercontinuum generation for adaptive femtosecond biophotonics

Geng Wang, Jindou Shi, Rishyashring Iyer, Janet Sorrells, Haohua Tu

APN, Vol. 3, Issue 04, 046012, (July 2024) https://doi.org/10.1117/12.10.1117/1.APN.3.4.046012

KEYWORDS: Supercontinuum generation, Biological imaging, Femtosecond phenomena, Biomedical optics, Video, Fiber lasers, Ultrafast phenomena, Photonic crystal fibers, Signal to noise ratio, Pulsed laser operation

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Proceedings Article | 13 March 2024 Presentation

Early selection of desired biopharmaceutical CHO cell lines using label-free multimodal optical microscopy and machine learning

Jindou Shi, Alexander Ho, Eric Chaney, Janet Sorrells, Kevin Tan, Aneesh Alex, Remben Talaban, Darold Spillman, Marina Marjanovic, Minh Doan, Steve Hood, Stephen Boppart

Proceedings Volume PC12846, PC1284603 (2024) https://doi.org/10.1117/12.3001298

KEYWORDS: Optical microscopy, Machine learning, Multiphoton fluorescence microscopy, Fluorescence lifetime imaging, Profiling, Ovary, Multiphoton microscopy, Multimodal imaging, Monte Carlo methods, Manufacturing

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Proceedings Article | 13 March 2024 Presentation

Attention-based weakly-supervised deep learning for the identification and localization of drug fingerprints based on label-free hyperspectral CARS microscopy

Jindou Shi, Kajari Bera, Prabuddha Mukherjee, Aneesh Alex, Eric Chaney, Bradley Spencer-Dene, Jan Majer, Marina Marjanovic, Darold Spillman, Steve Hood, Stephen Boppart

Proceedings Volume PC12821, PC1282106 (2024) https://doi.org/10.1117/12.3001269

KEYWORDS: Microscopy, Deep learning, Biological samples, Nervous system, Complex systems, Vibration, Spatial learning, Profiling, Optical imaging, Nondestructive evaluation

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Proceedings Article | 13 March 2024 Presentation

Predicting productivity in CHO cells based on co-occurrence of metabolism-related features in simultaneous label-free autofluorescence multiharmonic (SLAM) microscopy

Alexander Ho, Jindou Shi, Eric Chaney, Janet Sorrells, Kevin Tan, Aneesh Alex, Remben Talaban, Darold Spillman, Marina Marjanovic, Minh Doan, Steve Hood, Stephen Boppart

Proceedings Volume PC12854, PC1285407 (2024) https://doi.org/10.1117/12.3003094

KEYWORDS: Microscopy, Fluorescence lifetime imaging, Autofluorescence, Feature extraction, Support vector machines, Second harmonic generation, Proteins, Ovary, Multimodal imaging, Monte Carlo methods

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Proceedings Article | 13 March 2024 Poster

Self-supervised deep learning enables robust fluorescence lifetime estimation with limited photons

Jindou Shi, Alexander Ho, Kevin Tan, Janet Sorrells, Rishyashring Iyer, Eric Chaney, Darold Spillman, Marina Marjanovic, Stephen Boppart

Proceedings Volume PC12857, PC1285719 (2024) https://doi.org/10.1117/12.3001312

KEYWORDS: Fluorescence lifetime imaging, Photons, Fluorescence, Deep learning, Statistical analysis, Education and training, Biological research, Reliability, Molecular interactions, Microscopy

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Proceedings Article | 13 March 2024 Presentation

Pixelation with concentration-encoded effective photons for molecular optical sectioning microscopy

Geng Wang, Rishyashring Iyer, Janet Sorrells, Edita Aksamitiene, Eric Chaney, Carlos Renteria, Jaena Park, Jindou Shi, Yi Sun, Stephen Boppart, Haohua Tu

Proceedings Volume PC12836, PC128360H (2024) https://doi.org/10.1117/12.3001809

KEYWORDS: Photons, Optical microscopy, Multiphoton fluorescence microscopy, Microscopy, Reproducibility, Fluorescence microscopy, Fluorescence, Second harmonic generation, Reliability, Quality control

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Proceedings Article | 17 March 2023 Presentation

Speciation of otitis media causing bacterial biofilms using texture analysis features from OCT images

Farzana Zaki, Kavya Sudhir, Guillermo Monroy, Jindou Shi, Stephen Boppart

Proceedings Volume 12354, 1235403 (2023) https://doi.org/10.1117/12.2647878

KEYWORDS: Optical coherence tomography, Biological research, Ear, In vitro testing, Image analysis, Principal component analysis, In vivo imaging, Feature extraction, Binary data

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Proceedings Article | 15 March 2023 Presentation

Characterization of Chinese hamster ovary (CHO) cell lines by simultaneous label-free autofluorescence multi-harmonic (SLAM) microscopy for upstream bioprocessing (Conference Presentation)

Alexander Ho, Jindou Shi, Eric Chaney, Corey Snyder, Aneesh Alex, Remben Talaban, Janet Sorrells, Darold Spillman, Marina Marjanovic, Steve Hood, Stephen Boppart

Proceedings Volume PC12383, PC1238302 (2023) https://doi.org/10.1117/12.2646378

KEYWORDS: Microscopy, Ovary, Image processing, Luminescence, Image segmentation, Third-harmonic generation, Second-harmonic generation, Proteins, Multimodal imaging, Manufacturing

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Proceedings Article | 6 March 2023 Presentation

Machine learning-assisted label-free multimodal optical bioimaging for biopharmaceutical CHO cell line characterization

Jindou Shi, Alexander Ho, Corey Snyder, Eric Chaney, Janet Sorrells, Aneesh Alex, Remben Talaban, Darold Spillman, Marina Marjanovic, Steve Hood, Stephen Boppart

Proceedings Volume PC12371, PC123710D (2023) https://doi.org/10.1117/12.2648499

KEYWORDS: Microscopy, Image segmentation, Fluorescence lifetime imaging, Feature extraction, Biomedical optics, Therapeutic antibodies, Proteins, Profiling, Ovary, Neural networks

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Proceedings Article | 9 March 2022 Presentation

Explainable weakly-supervised learning for optical biomarker discovery in multiphoton virtual histology

Jindou Shi, Haohua Tu, Jaena Park, Stephen Boppart

Proceedings Volume PC12019, PC1201905 (2022) https://doi.org/10.1117/12.2608769

KEYWORDS: Tumors, Tumor growth modeling, Breast cancer, Biomedical optics, Neural networks, Microscopy, Eye, Excel, Data modeling, Collagen

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Proceedings Article | 7 March 2022 Presentation

Monitoring the delivery of lipid nanoparticle encapsulated self-amplifying mRNA vaccine using coherent Raman microscopy and multiphoton imaging

Kajari Bera, Prabuddha Mukherjee, Edita Aksamitiene, Aneesh Alex, Jindou Shi, Darold Spillman, Marina Marjanovic, Ahmed Shabana, Russell Johnson, Steve Hood, Stephen Boppart

Proceedings Volume PC11938, PC119380A (2022) https://doi.org/10.1117/12.2609087

KEYWORDS: Multiphoton microscopy, Microscopy, Nanoparticles, Raman spectroscopy, Green fluorescent protein, CARS tomography, Multiphoton fluorescence microscopy, Luminescence, Proteins, Multimodal imaging

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Proceedings Article | 7 March 2022 Presentation

Label free and non-destructive imaging approach for cell line selection of genetically modified functional Chinese Hamster Ovary (CHO) Cells

Prabuddha Mukherjee, Edita Aksamitiene, Aneesh Alex, Jindou Shi, Eric Chaney, Remben Talaban, Maire Daly, Darold Spillman, Marina Marjanovic, Gary Finka, Steve Hood, Stephen Boppart

Proceedings Volume PC11964, PC119640C (2022) https://doi.org/10.1117/12.2608764

KEYWORDS: Ovary, Nondestructive evaluation, Fluorescence lifetime imaging, Optical imaging, Mode conditioning cables, Microscopy, Luminescence, Image analysis, Genetics, Cell biology

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Proceedings Article | 7 March 2022 Presentation

Differential uptake of antisense oligonucleotides in mouse hepatocytes and macrophages revealed by simultaneous 2P-fluorescence and coherent Raman imaging

Prabuddha Mukherjee, Edita Aksamitiene, Aneesh Alex, Jindou Shi, Kajari Bera, Chi Zhang, Darold Spillman, Marina Marjanovic, Michael Fazio, Punit Seth, Kendall Frazier, Steve Hood, Stephen Boppart

Proceedings Volume PC11938, PC119380D (2022) https://doi.org/10.1117/12.2608740

KEYWORDS: Coherence imaging, Luminescence, Raman spectroscopy, Liver, Receptors, Two photon imaging, Tissues, Multimodal imaging, Molecules, Modulation

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Proceedings Article | 7 March 2022 Presentation

AI-assisted simultaneous label-free autofluorescence multiharmonic (SLAM) microscopy for the discovery of human breast cancer-related optical biomarkers

Jindou Shi, Haohua Tu, Jaena Park, Stephen Boppart

Proceedings Volume PC11952, PC1195205 (2022) https://doi.org/10.1117/12.2608857

KEYWORDS: Microscopy, Breast, Tissue optics, Tumors, Breast cancer, Tumor growth modeling, Tissues, Reliability, Profiling, Optical microscopy

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Proceedings Article | 2 March 2022 Presentation

Label-free multimodal multiphoton imaging of Liver-on-a-Chip models

Aneesh Alex, Terrence Roh, BanuPriya Sridharan, Jindou Shi, Prabuddha Mukherjee, Eric Chaney, James Tunstead, Jan Majer, Kajari Bera, Darold Spillman, Marina Marjanovic, Jason Ekert, Steve Hood, Stephen Boppart

Proceedings Volume PC11972, PC1197202 (2022) https://doi.org/10.1117/12.2608861

KEYWORDS: Liver, Multiphoton microscopy, Multimodal imaging, 3D modeling, Multiphoton fluorescence microscopy, Microscopy, Optical imaging, Fluorescence lifetime imaging, Toxicology, Tissues

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